arvados-python-client | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

pythonpy	python -c, with tab completion and shorthand
chanjo	Coverage analysis tool for clinical sequencing
bcbio-nextgen	Best-practice pipelines for fully automated high throughput sequencing analysis
gffutils	Work with GFF and GTF files in a flexible database framework
fadapa	FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python
cyvcf	A fast Python library for VCF files using Cython for speed.
cutadapt	trim adapters from high-throughput sequencing reads
bcbreport	report templates for bcbio analysis.
ipython-cluster-helper	Simplify IPython cluster start up and use for multiple schedulers.
bioblend	CloudMan and Galaxy API library
pybedtools	Wrapper around BEDTools for bioinformatics work
canvas	canvas is a simple interface to most common matplotlib functions
smashbenchmarking	Check the accuracy of one VCF callset against another
svtyper	Bayesian genotyper for structural variants
metaseq	Integrative analysis of high-thoughput sequencing data
beagle	Command line client for Hound
shapeit	It's Shapely with projections and some other conveniences!
pysamstats	A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
svtools	Tools for processing and analyzing structural variants

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install arvados-python-client==2.3.0