pip install chanjo==4.6.1
Coverage analysis tool for clinical sequencing
SourceAmong top 10% packages on PyPI.
Over 9.7K downloads in the last 90 days.
chanjo
Based on how often these packages appear together in public
requirements.txt
files on GitHub.
Best-practice pipelines for fully automated high throughput sequencing analysis |
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FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python |
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report templates for bcbio analysis. |
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python -c, with tab completion and shorthand |
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A fast Python library for VCF files using Cython for speed. |
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Work with GFF and GTF files in a flexible database framework |
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Arvados client library |
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Simplify IPython cluster start up and use for multiple schedulers. |
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trim adapters from high-throughput sequencing reads |
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CloudMan and Galaxy API library |
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Wrapper around BEDTools for bioinformatics work |
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A logging replacement for Python |
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Variant Call Format (VCF) parser for Python |
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canvas is a simple interface to most common matplotlib functions |
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Check the accuracy of one VCF callset against another |
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Bayesian genotyper for structural variants |
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Command line client for Hound |
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Integrative analysis of high-thoughput sequencing data |
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Tools for processing and analyzing structural variants |
chanjo
Proportion of downloaded versions in the last 3 months (only versions over 1%).
4.6.1 |
8.03% |
4.2.0 |
2.27% |
4.1.1 |
2.13% |
2.3.2 |
2.12% |
4.1.3 |
2.05% |
3.2.0 |
1.99% |
3.4.1 |
1.98% |
2.3.0 |
1.98% |
3.2.1 |
1.97% |
3.4.0 |
1.96% |
3.0.0b2 |
1.96% |
2.1.3 |
1.96% |
2.0.1 |
1.95% |
2.2.0 |
1.95% |
3.3.0 |
1.95% |
1.0.1-beta |
1.94% |
2.2.1 |
1.94% |
3.0.1 |
1.94% |
3.3.1 |
1.94% |
2.3.1 |
1.94% |
2.1.1 |
1.94% |
3.1.0 |
1.93% |
2.0.0 |
1.93% |
2.1.0 |
1.93% |
3.0.0 |
1.92% |
3.0.2 |
1.92% |
2.1.2 |
1.91% |
2.0.2 |
1.90% |
3.1.1 |
1.90% |
2.0.0-beta5 |
1.89% |
4.0.0b4 |
1.88% |
2.0.0-beta6 |
1.87% |
3.0.0b0 |
1.86% |
4.0.0b0 |
1.85% |
4.4.0 |
1.19% |
4.3.0 |
1.17% |
1.0.2-beta |
1.10% |