pip install pythonpy==0.4.11

python -c, with tab completion and shorthand

Source
Among top 10% packages on PyPI.
Over 5.6K downloads in the last 90 days.

Commonly used with pythonpy

Based on how often these packages appear together in public requirements.txt files on GitHub.

chanjo

Coverage analysis tool for clinical sequencing

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

fadapa

FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

bcbreport

report templates for bcbio analysis.

gffutils

Work with GFF and GTF files in a flexible database framework

cyvcf

A fast Python library for VCF files using Cython for speed.

arvados-python-client

Arvados client library

ipython-cluster-helper

Simplify IPython cluster start up and use for multiple schedulers.

cutadapt

trim adapters from high-throughput sequencing reads

bioblend

CloudMan and Galaxy API library

pybedtools

Wrapper around BEDTools for bioinformatics work

canvas

canvas is a simple interface to most common matplotlib functions

smashbenchmarking

Check the accuracy of one VCF callset against another

metaseq

Integrative analysis of high-thoughput sequencing data

svtyper

Bayesian genotyper for structural variants

beagle

Command line client for Hound

svtools

Tools for processing and analyzing structural variants

mosaik

Mosaik is a flexible Smart-Grid co-simulation framework.

manta

A Python SDK for Joyent's Manta service

Version usage of pythonpy

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.4.11

27.59%

0.4.9

1.32%

0.4.10

1.30%

0.4.6

1.07%

0.3.8

1.05%

0.4.4

1.05%

0.4.7

1.05%

0.4.8

1.05%

0.4.5

1.04%

0.4.0

1.04%

0.1.5

1.04%

0.3.7

1.04%

0.4.2

1.04%

0.3.6

1.04%

0.3.1

1.02%

0.3.2

1.02%

0.4.3

1.02%

0.2.2

1.02%

0.1.2

1.02%

0.3.1dev6

1.00%

0.1.6dev

1.00%

0.2.3dev

1.00%

0.2.3

1.00%

0.2.1

1.00%