bcbreport | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

fadapa	FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python
bcbio-nextgen	Best-practice pipelines for fully automated high throughput sequencing analysis
chanjo	Coverage analysis tool for clinical sequencing
cyvcf	A fast Python library for VCF files using Cython for speed.
gffutils	Work with GFF and GTF files in a flexible database framework
pythonpy	python -c, with tab completion and shorthand
ipython-cluster-helper	Simplify IPython cluster start up and use for multiple schedulers.
bioblend	CloudMan and Galaxy API library
cutadapt	trim adapters from high-throughput sequencing reads
arvados-python-client	Arvados client library
pybedtools	Wrapper around BEDTools for bioinformatics work
Logbook	A logging replacement for Python
PyVCF	Variant Call Format (VCF) parser for Python
canvas	canvas is a simple interface to most common matplotlib functions
smashbenchmarking	Check the accuracy of one VCF callset against another
svtyper	Bayesian genotyper for structural variants
beagle	Command line client for Hound
metaseq	Integrative analysis of high-thoughput sequencing data
svtools	Tools for processing and analyzing structural variants

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install bcbreport==0.99.20