pip install pysamstats==1.1.2

svtyper

Bayesian genotyper for structural variants

pysamstats

A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

shapeit

It's Shapely with projections and some other conveniences!

ngsutils

NGSUtils - Various utilities for working with NGS data

smashbenchmarking

Check the accuracy of one VCF callset against another

metaseq

Integrative analysis of high-thoughput sequencing data

adam

Adam programming language implemented in python

beagle

Command line client for Hound

manta

A Python SDK for Joyent's Manta service

ncbi-genome-download

Download genome files from the NCBI FTP server.

sourmash

tools for comparing DNA sequences with MinHash sketches

canvas

canvas is a simple interface to most common matplotlib functions

mosaik

Mosaik is a flexible Smart-Grid co-simulation framework.

skewer

Enumerate AWS resources and index them in ElasticSearch

mosaik-householdsim

A simple simulator for household profiles.

mosaik-csv

Presents CSV datasets to mosaik as models.

mosaik-web

A simple simulation visualization for the browser.

mosaik-pypower

An adapter to use PYPOWER with mosaik.

mosaik-api

Python implementation of the mosaik API.

1.1.2

10.20%

1.1.0

2.64%

1.1.1

2.62%

1.0.1

2.06%

1.0.0

1.92%

0.24.3

1.87%

0.24.2

1.82%

0.15.1

1.82%

0.24.0

1.82%

0.5

1.78%

0.22

1.78%

0.12

1.78%

0.6.2

1.78%

0.6

1.78%

0.20

1.78%

0.10

1.78%

0.9

1.78%

0.16

1.78%

0.4.8

1.78%

0.17

1.78%

0.18

1.78%

0.24.1

1.78%

0.15

1.75%

0.4.9

1.75%

0.7

1.75%

0.4.7

1.75%

0.21

1.75%

0.6.3

1.75%

0.14

1.75%

0.8.1

1.75%

0.23

1.75%

0.4.6

1.75%

0.11.1

1.75%

0.19

1.73%

0.9.1

1.73%

0.8.3

1.73%

0.8

1.73%

0.6.1

1.73%

0.8.2

1.70%

0.4.3

1.46%

0.4.5

1.44%

0.4.4

1.42%

0.20b1

1.39%

0.4

1.39%

0.2

1.39%

0.3

1.39%

0.1

1.37%

0.4.1

1.37%

0.4.2

1.37%

0.20b3

1.32%

0.20b2

1.32%

0.24.0rc2

1.30%

0.24.0rc1

1.30%

0.20b4

1.25%