pip install bcbio-nextgen==1.1.5
Best-practice pipelines for fully automated high throughput sequencing analysis
SourceAmong top 10% packages on PyPI.
Over 5.9K downloads in the last 90 days.
bcbio-nextgen
Based on how often these packages appear together in public
requirements.txt
files on GitHub.
FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python |
|
Coverage analysis tool for clinical sequencing |
|
report templates for bcbio analysis. |
|
python -c, with tab completion and shorthand |
|
A fast Python library for VCF files using Cython for speed. |
|
Work with GFF and GTF files in a flexible database framework |
|
Simplify IPython cluster start up and use for multiple schedulers. |
|
trim adapters from high-throughput sequencing reads |
|
CloudMan and Galaxy API library |
|
Arvados client library |
|
Wrapper around BEDTools for bioinformatics work |
|
A logging replacement for Python |
|
Variant Call Format (VCF) parser for Python |
|
canvas is a simple interface to most common matplotlib functions |
|
Check the accuracy of one VCF callset against another |
|
Bayesian genotyper for structural variants |
|
Command line client for Hound |
|
Integrative analysis of high-thoughput sequencing data |
|
Tools for processing and analyzing structural variants |
bcbio-nextgen
Proportion of downloaded versions in the last 3 months (only versions over 1%).
1.1.5 |
3.85% |
1.1.0 |
2.08% |
1.1.4 |
2.08% |
1.1.3 |
2.06% |
1.1.2 |
1.91% |
1.1.1 |
1.82% |
1.0.9 |
1.79% |
1.0.3 |
1.77% |
1.0.1 |
1.77% |
1.0.7 |
1.77% |
1.0.6 |
1.76% |
1.0.5 |
1.74% |
1.0.8 |
1.74% |
1.0.4 |
1.74% |
1.0.2 |
1.74% |
1.0.0 |
1.72% |
0.9.9 |
1.72% |
0.1 |
1.72% |
0.7.8 |
1.71% |
0.7.2 |
1.71% |
0.9.8 |
1.71% |
0.8.7 |
1.69% |
0.7.4 |
1.69% |
0.7.5 |
1.69% |
0.6.1 |
1.69% |
0.6.4 |
1.69% |
0.9.7 |
1.69% |
0.5a |
1.69% |
0.9.3 |
1.69% |
0.9.0 |
1.69% |
0.8.4 |
1.67% |
0.8.3 |
1.67% |
0.2 |
1.67% |
0.4a |
1.67% |
0.8.1 |
1.67% |
0.9.1 |
1.67% |
0.7.3 |
1.67% |
0.8.9 |
1.67% |
0.8.5 |
1.67% |
0.7.7 |
1.67% |
0.7.1 |
1.67% |
0.7.0 |
1.67% |
0.8.0 |
1.67% |
0.8.8 |
1.67% |
0.9.5 |
1.67% |
0.6.5 |
1.66% |
0.6.2 |
1.66% |
0.9.6 |
1.66% |
0.8.6 |
1.66% |
0.8.2 |
1.66% |
0.7.9 |
1.66% |
0.6.3 |
1.66% |
0.9.4 |
1.66% |
0.6.0 |
1.66% |
0.7.6 |
1.64% |
0.9.4a0 |
1.62% |
0.9.2 |
1.62% |