shapeit | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

shapeit	It's Shapely with projections and some other conveniences!
beagle	Command line client for Hound
svtools	Tools for processing and analyzing structural variants
smashbenchmarking	Check the accuracy of one VCF callset against another
manta	A Python SDK for Joyent's Manta service
svtyper	Bayesian genotyper for structural variants
adam	Adam programming language implemented in python
ngsutils	NGSUtils - Various utilities for working with NGS data
sourmash	tools for comparing DNA sequences with MinHash sketches
ncbi-genome-download	Download genome files from the NCBI FTP server.
canvas	canvas is a simple interface to most common matplotlib functions
metaseq	Integrative analysis of high-thoughput sequencing data
mosaik	Mosaik is a flexible Smart-Grid co-simulation framework.
skewer	Enumerate AWS resources and index them in ElasticSearch
mosaik-householdsim	A simple simulator for household profiles.
mosaik-csv	Presents CSV datasets to mosaik as models.
mosaik-web	A simple simulation visualization for the browser.
mosaik-pypower	An adapter to use PYPOWER with mosaik.
mosaik-api	Python implementation of the mosaik API.

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install shapeit==0.0.7