HTSeq | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

blacktie	A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.
fastcluster	Fast hierarchical clustering routines for R and Python.
ruffus	Light-weight Python Computational Pipeline Management
Sumatra	A tool for automated tracking of computation-based scientific projects
autowrap	Generates Python Extension modules from commented Cython PXD files
lazyutils	Lazy accessor and other tools for deferred evaluation.
entropy	entropy is a command line friend that helps you reduce entropy in your life
copyright	Add or replace license boilerplate in source code files.
pyclips	Python CLIPS interface
pyssc32	SSC32 controlling library
cyvcf2	fast vcf parsing with cython + htslib
hic	Tools for analyzing heavy-ion collision simulations.
pycrystal	Utilities for ab initio modeling suite CRYSTAL
CppHeaderParser	Parse C++ header files and generate a data structure representing the class
bx-python	Tools for manipulating biological data, particularly multiple sequence alignments
ase	Atomic Simulation Environment
pyfaidx	pyfaidx: efficient pythonic random access to fasta subsequences
geminicassandra	A database framework for exploring genetic variation
Polygon2	Polygon2 is a Python-2 package that handles polygonal shapes in 2D

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install HTSeq==0.13.5