cyvcf2 | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

pybedtools	Wrapper around BEDTools for bioinformatics work
ipython-cluster-helper	Simplify IPython cluster start up and use for multiple schedulers.
gffutils	Work with GFF and GTF files in a flexible database framework
cyvcf	A fast Python library for VCF files using Cython for speed.
pysam	pysam
cutadapt	trim adapters from high-throughput sequencing reads
bcbreport	report templates for bcbio analysis.
bcbio-nextgen	Best-practice pipelines for fully automated high throughput sequencing analysis
fadapa	FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python
pythonpy	python -c, with tab completion and shorthand
chanjo	Coverage analysis tool for clinical sequencing
ncbi-genome-download	Download genome files from the NCBI FTP server.
ngsutils	NGSUtils - Various utilities for working with NGS data
metaseq	Integrative analysis of high-thoughput sequencing data
manta	A Python SDK for Joyent's Manta service
adam	Adam programming language implemented in python
sourmash	tools for comparing DNA sequences with MinHash sketches
svtools	Tools for processing and analyzing structural variants
svtyper	Bayesian genotyper for structural variants

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install cyvcf2==0.30.12