ruffus | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

Sumatra	A tool for automated tracking of computation-based scientific projects
blacktie	A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.
autowrap	Generates Python Extension modules from commented Cython PXD files
entropy	entropy is a command line friend that helps you reduce entropy in your life
hgapi	Python API to Mercurial using the command-line interface
HTSeq	A framework to process and analyze data from high-throughput sequencing (HTS) assays
pp	Parallel and distributed programming for Python
drmaa	a python DRMAA library
WSGIProxy	HTTP proxying tools for WSGI apps
konfig	Yet Another Config Parser.
plumber	An alternative to mixin-based extension of classes.
LRSignature	Learning Registry resource data digital signature management
pyCLI	Simple, object-oriented approach to Python CLI apps
hawkauthlib	Hawk Access Authentication protocol
python-cjson	Fast JSON encoder/decoder for Python
tokenlib	Generic library for managing signed authentication tokens.
pyramid_hawkauth	A Pyramid authentication plugin for HAWK
promptly	Console Prompting
fudge	Replace real objects with fakes (mocks, stubs, etc) while testing.

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install ruffus==2.8.4