pip install pyfaidx==0.6.3.1

pyfaidx: efficient pythonic random access to fasta subsequences

Source
Among top 2% packages on PyPI.
Over 111.6K downloads in the last 90 days.

Commonly used with pyfaidx

Based on how often these packages appear together in public requirements.txt files on GitHub.

bioformats

Classes to handle bioinformatics data

pypairix

Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md.

bpforms

Unambiguous representation of modified DNA, RNA, and proteins

rasterio

Fast and direct raster I/O for use with Numpy and SciPy

sphinxcontrib.datatemplates

Sphinx extension for rendering data files as nice HTML

pipe

Module enablig a sh like infix syntax (using pipes)

weightedstats

Mean, weighted mean, median, weighted median

toolshed

Tools for data

trivup

Trivially Up a cluster of programs, such as a Kafka cluster

good

Slim yet handsome validation library

planet

Planet API Client

gammapy

A Python package for gamma-ray astronomy

bumper-lib

A library to bump / pin your dependency requirements.

pyjson5

JSON5 serializer and parser for Python 3 written in Cython.

h3mlcore

None

aiozmq

ZeroMQ integration with asyncio.

parsable

Lightweight argument parsing using a decorator

cogent

COmparative GENomics Toolkit

biopython

Freely available tools for computational molecular biology.

Version usage of pyfaidx

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.6.2

45.17%

0.5.9.5

23.77%

0.6.3.1

7.72%

0.6.1

7.01%

0.5.5.2

5.13%

0.4.8.2

2.26%

0.5.9.2

1.63%