fastcluster | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

HTSeq	A framework to process and analyze data from high-throughput sequencing (HTS) assays
affinegap	A Cython implementation of the affine gap string distance
categorical-distance	Compare two categorical variables
rlr	Case weighted L2 regularized logistic regression
dedupe	A python library for accurate and scaleable data deduplication and entity-resolution
seqmagick	Tools for converting and modifying sequence files from the command-line
numpy	NumPy is the fundamental package for array computing with Python.
biopython	Freely available tools for computational molecular biology.
simplecosine	Simple cosine distance
dedupe-hcluster	Hierarchical Clustering Algorithms (Information Theory)
PyLBFGS	LBFGS and OWL-QN optimization algorithms
canonicalize	canonicalize a cluster of records
textblob-aptagger	A fast and accurate part-of-speech tagger for TextBlob.
scikit-sparse	Scikits sparse matrix package
pipe	Module enablig a sh like infix syntax (using pipes)
pyrfr	None
bx-python	Tools for manipulating biological data, particularly multiple sequence alignments
pyfaidx	pyfaidx: efficient pythonic random access to fasta subsequences
hcluster	A hierarchical clustering package for Scipy.

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install fastcluster==1.2.4