pip install blacktie==0.2.1.2

A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.

Source
Among top 50% packages on PyPI.
Over 645 downloads in the last 90 days.

Commonly used with blacktie

Based on how often these packages appear together in public requirements.txt files on GitHub.

Sumatra

A tool for automated tracking of computation-based scientific projects

autowrap

Generates Python Extension modules from commented Cython PXD files

entropy

entropy is a command line friend that helps you reduce entropy in your life

ruffus

Light-weight Python Computational Pipeline Management

hgapi

Python API to Mercurial using the command-line interface

HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays

pp

Parallel and distributed programming for Python

pyCLI

Simple, object-oriented approach to Python CLI apps

paragram

erlang-style concurrency library for python

plumber

An alternative to mixin-based extension of classes.

plyr

UNKNOWN

cutadapt

trim adapters from high-throughput sequencing reads

kaptan

Configuration manager

node

Building data structures as node trees

drmaa

a python DRMAA library

gerrit-dash-creator

Gerrit Dashboard Creator

geminicassandra

A database framework for exploring genetic variation

gemini

A database framework for exploring genetic variation

oct2py

Python to GNU Octave bridge --> run m-files from python.

Version usage of blacktie

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.2.1

32.71%

0.2.0rc1

28.99%

0.2.1.2

22.95%

0.1.1

15.35%