pip install Sumatra==0.7.4

A tool for automated tracking of computation-based scientific projects

Source
Among top 50% packages on PyPI.
Over 2.1K downloads in the last 90 days.

Commonly used with Sumatra

Based on how often these packages appear together in public requirements.txt files on GitHub.

blacktie

A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.

autowrap

Generates Python Extension modules from commented Cython PXD files

entropy

entropy is a command line friend that helps you reduce entropy in your life

ruffus

Light-weight Python Computational Pipeline Management

hgapi

Python API to Mercurial using the command-line interface

pp

Parallel and distributed programming for Python

plumber

An alternative to mixin-based extension of classes.

HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays

node

Building data structures as node trees

drmaa

a python DRMAA library

pyCLI

Simple, object-oriented approach to Python CLI apps

python-cjson

Fast JSON encoder/decoder for Python

plyr

UNKNOWN

oct2py

Python to GNU Octave bridge --> run m-files from python.

zope.lifecycleevent

Object life-cycle events

fudge

Replace real objects with fakes (mocks, stubs, etc) while testing.

twitter-text-py

A library for auto-converting URLs, mentions, hashtags, lists, etc. in Twitter text. Also does tweet validation and search term highlighting.

cutadapt

trim adapters from high-throughput sequencing reads

konfig

Yet Another Config Parser.

Version usage of Sumatra

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.7.4

11.27%

0.7.3

7.05%

0.7.2

7.00%

0.5.2

6.62%

0.7.0

6.28%

0.6.0

6.28%

0.7.1

6.28%

0.5.0

6.24%

0.5.1

6.24%

0.5.3

6.24%

0.3.0

6.19%

0.2.1

6.14%

0.4.0

6.14%

0.1

6.04%

0.2

6.00%