ngsutils | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

adam	Adam programming language implemented in python
ncbi-genome-download	Download genome files from the NCBI FTP server.
pysamstats	A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
manta	A Python SDK for Joyent's Manta service
sourmash	tools for comparing DNA sequences with MinHash sketches
ngsutils	NGSUtils - Various utilities for working with NGS data
smashbenchmarking	Check the accuracy of one VCF callset against another
metaseq	Integrative analysis of high-thoughput sequencing data
svtyper	Bayesian genotyper for structural variants
beagle	Command line client for Hound
mosaik	Mosaik is a flexible Smart-Grid co-simulation framework.
shapeit	It's Shapely with projections and some other conveniences!
canvas	canvas is a simple interface to most common matplotlib functions
skewer	Enumerate AWS resources and index them in ElasticSearch
mosaik-householdsim	A simple simulator for household profiles.
mosaik-csv	Presents CSV datasets to mosaik as models.
mosaik-web	A simple simulation visualization for the browser.
mosaik-pypower	An adapter to use PYPOWER with mosaik.
mosaik-api	Python implementation of the mosaik API.

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install ngsutils==0.5.9