pip install gemini==0.30.2

A database framework for exploring genetic variation

Source
Among top 50% packages on PyPI.
Over 4.5K downloads in the last 90 days.

Commonly used with gemini

Based on how often these packages appear together in public requirements.txt files on GitHub.

inheritance

inheritance models for mendelian genetics

geneimpacts

normalize effects from variant annotation tools (snpEff, VEP)

geminicassandra

A database framework for exploring genetic variation

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

tfa-nightly

TensorFlow Addons.

caspo

Reasoning on the response of logical signaling networks with Answer Set Programming

cyvcf2

fast vcf parsing with cython + htslib

surgeo

Bayesian Improved Surname Geocoder model

pgmpy

A library for Probabilistic Graphical Models

admiral

Simple python high-performance computing cluster batch submission

abydos

Abydos NLP/IR library

naive-bayes

Naive Bayes Text Classification

cythrust

Cython bindings for the Thrust parallel library.

pybedtools

Wrapper around BEDTools for bioinformatics work

pyinter

An interval package for Python.

regreg

A multi-algorithm Python framework for regularized regression

pyprofit

Libprofit wrapper for Python

Assimulo

A package for solving ordinary differential equations and differential algebraic equations.

scikit-allel

A Python package for exploring and analysing genetic variation data.

Version usage of gemini

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.30.2

5.86%

0.16.3

5.26%

0.18.2

3.88%

0.18.3

3.88%

0.18.1

3.56%

0.14.0

3.54%

0.18.0

3.54%

0.16.1

3.50%

0.10.0

3.50%

0.12.1

3.47%

0.10.1

3.47%

0.13.0

3.45%

0.13.1

3.45%

0.16.0

3.45%

0.16.2

3.43%

0.15.1

3.43%

0.12.2

3.41%

0.15.0

3.41%

0.17.1

3.41%

0.9.1

3.41%

0.11.0

3.41%

0.17.0

1.67%

0.17.2

1.65%

0.8.0

1.65%

0.6.5

1.65%

0.6.2

1.60%

0.7.1

1.58%

0.7.0

1.58%

0.6.3.1

1.58%

0.6.2.2

1.58%

0.6.3.2

1.56%

0.6.4

1.56%

0.6.3

1.56%

0.9.0

1.56%

0.6.2.1

1.51%