pip install DendroPy==4.5.2

A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.

Source
Among top 10% packages on PyPI.
Over 10.1K downloads in the last 90 days.

Commonly used with DendroPy

Based on how often these packages appear together in public requirements.txt files on GitHub.

fastalite

Simplest possible fasta parser

taxtastic

Tools for taxonomic naming and annotation

seqmagick

Tools for converting and modifying sequence files from the command-line

pylsl

Python interface to the Lab Streaming Layer

gp

UNKNOWN

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

pymatgen

Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project (https://www.materialsproject.org).

multihist

Convenience wrappers around numpy histograms

ConfigSpace

Creation and manipulation of parameter configuration spaces for automated algorithm configuration and hyperparameter tuning.

tensorly

Tensor learning in Python.

lightgbm

LightGBM Python Package

geneimpacts

normalize effects from variant annotation tools (snpEff, VEP)

inheritance

inheritance models for mendelian genetics

vanity

Get package download statistics from PyPI

sphinxcontrib-osexample

Sphinx extension for OS code-blocks

gemini

A database framework for exploring genetic variation

ete2

A Python Environment for (phylogenetic) Tree Exploration

slam

Serverless application manager

barnum

Create random data for your applications

Version usage of DendroPy

Proportion of downloaded versions in the last 3 months (only versions over 1%).

4.5.2

54.91%

4.4.0

7.16%

4.5.1

2.75%

4.3.0

2.12%

4.0.3

2.01%

4.0.0

2.00%

3.12.2

1.94%

3.12.0

1.91%

4.1.0

1.89%

3.12.3

1.89%

4.2.0

1.85%

4.0.2

1.82%

3.10.0

1.80%

3.8.1

1.80%

4.0.1

1.80%

3.7.0

1.79%

3.7.1

1.77%

3.11.0

1.77%

3.10.1

1.77%

3.8.0

1.76%

3.9.0

1.75%

4.0.0.rc1

1.72%