pip install ete2==2.3.10

A Python Environment for (phylogenetic) Tree Exploration

Source
Among top 10% packages on PyPI.
Over 10.1K downloads in the last 90 days.

Commonly used with ete2

Based on how often these packages appear together in public requirements.txt files on GitHub.

biopython

Freely available tools for computational molecular biology.

cooler

Sparse binary format for genomic interaction matrices

pysam

pysam

toolshed

Tools for data

xarray

N-D labeled arrays and datasets in Python

pyprofit

Libprofit wrapper for Python

fanova

Functional ANOVA: an implementation of the ICML 2014 paper 'An Efficient Approach for Assessing Hyperparameter Importance' by Frank Hutter, Holger Hoos and Kevin Leyton-Brown.

cythrust

Cython bindings for the Thrust parallel library.

pandas

Powerful data structures for data analysis, time series, and statistics

matplotlib-scalebar

Artist for matplotlib to display a scale bar

geopandas

Geographic pandas extensions

netCDF4

Provides an object-oriented python interface to the netCDF version 4 library.

surgeo

Bayesian Improved Surname Geocoder model

skll

SciKit-Learn Laboratory makes it easier to run machine learning experiments with scikit-learn.

lifelines

Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression

rpy2

Python interface to the R language (embedded R)

plotly

An open-source, interactive data visualization library for Python

deap

Distributed Evolutionary Algorithms in Python

cplex

A Python interface to the CPLEX Callable Library, Community Edition.

Version usage of ete2

Proportion of downloaded versions in the last 3 months (only versions over 1%).

2.3.10

5.83%

2.3.7

2.60%

2.3.9

2.60%

2.3.8

2.58%

2.3.6

2.42%

2.3.5

2.40%

2.3.4

2.31%

2.3.3

2.29%

2.3.2

2.25%

2.3.1

2.23%

2.2.1069

2.12%

2.2.1071

2.10%

2.2.1072

2.10%

2.2rev1068

2.09%

2.2.1070

2.08%

2.2rev1066

2.08%

2.2rev1065

2.06%

2.2rev1060

2.05%

2.2rev1063

2.04%

2.2rev1019

2.04%

2.2rev1056

2.03%

2.2rev1025

2.02%

2.1rev545

2.02%

2.2rev1016

2.01%

2.2rev1026

2.01%

2.2rev1014

2.00%

2.1rev544

1.99%

2.2rev1064

1.99%

2.1rev539

1.97%

2.1rev536

1.96%

2.1rev498

1.94%

2.0rev89

1.93%

2.1rev534

1.93%

2.1rev492

1.92%

2.1rev489

1.91%

2.0rev111

1.91%

2.0rev110

1.90%

2.0rev109

1.87%

2.0rev86

1.86%

2.0rev104

1.84%

2.0rev100

1.84%

2.0rev105

1.83%

2.0rev95

1.82%

2.0rev99

1.81%

2.0rev96

1.81%

2.0rev94

1.80%

2.0rev90

1.76%