obonet | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

pybiopax	A Python implementation of the BioPAX object model, and parts of PaxTools.
pybel	Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
protmapper	Map protein sites to human reference sequence.
pysb	Python Systems Biology modeling framework
hepbasestack	Collection of tools/snippets useful for working with the python data analysis stack. Provides logging, matplotlibstyles, etc.
ijroi	Reads ImageJ ROIs.
jstyleson	Library to parse JSON with js-style comments.
pyjags	Python interface to JAGS library for Bayesian data analysis.
ctbBio	scripts for working with sequencing data
probscale	mpl-probscale: Probabily scales for matplotlib
pydata-sphinx-theme	Bootstrap-based Sphinx theme from the PyData community
pyentrp	Functions on top of NumPy for computing different types of entropy
sos-notebook	Script of Scripts (SoS): an interactive, cross-platform, and cross-language workflow system for reproducible data analysis
hopcroftkarp	Implementation of HopcroftKarp's algorithm
lineid_plot	Automatic placement of labels in a plot.
isochrones	Defines objects for interpolating stellar model grids.
tsfresh	tsfresh extracts relevant characteristics from time series
mwreverts	A set of utilities for detecting reverts in MediaWiki revisions.
qpsolvers	Quadratic Programming solvers for Python with a unified API

`pip install obonet==0.3.0`