pip install pysb==1.13.0

Python Systems Biology modeling framework

Source
Among top 50% packages on PyPI.
Over 4.4K downloads in the last 90 days.

Commonly used with pysb

Based on how often these packages appear together in public requirements.txt files on GitHub.

protmapper

Map protein sites to human reference sequence.

pybel

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

pybiopax

A Python implementation of the BioPAX object model, and parts of PaxTools.

petab

Parameter estimation tabular data

obonet

Parse OBO formatted ontologies into networkx

metatab

Data format for storing structured data in spreadsheet tables

ttp

Template Text Parser

pydata-sphinx-theme

Bootstrap-based Sphinx theme from the PyData community

friendlysam

Toolbox for optimization-based modelling and simulation.

pandas-td

Pandas extension for Treasure Data

luma.led_matrix

A library to drive a MAX7219 LED serializer (using SPI) and WS2812 NeoPixels (using DMA)

poretools

A toolset for working with nanopore sequencing data

pywikibase

Python package to handle Wikibase DataModel

SetSimilaritySearch

A Python library of set similarity search algorithms

pandera

A light-weight and flexible validation package for pandas data structures.

sharepa

A library for browsing and analyzing SHARE data

nteract-scrapbook

A library for recording and reading data in Jupyter and nteract Notebooks

jstyleson

Library to parse JSON with js-style comments.

pyjags

Python interface to JAGS library for Bayesian data analysis.

Version usage of pysb

Proportion of downloaded versions in the last 3 months (only versions over 1%).

1.9.1

35.73%

1.13.0

25.02%

1.11.1

2.54%

1.12.0

2.44%

1.11.0

1.60%

1.9.0

1.58%

1.0.1

1.39%

0.1.11

1.39%

1.10.0

1.39%

1.8.1

1.37%

1.5.0

1.33%

1.3.0

1.30%

0.1.8

1.30%

0.1.9

1.30%

1.7.0

1.30%

0.1.6

1.30%

1.2.1

1.30%

1.8.0

1.30%

0.1.5

1.28%

0.1.3

1.28%

1.0.0

1.28%

1.2.2

1.28%

0.1.7

1.28%

0.1.4

1.28%

1.4.0

1.28%

1.2.0

1.26%

1.6.0

1.23%

1.1.1

1.23%

1.1.0

1.21%

0.1.10

1.21%