pip install cooler==0.8.11

Sparse binary format for genomic interaction matrices

Source
Among top 10% packages on PyPI.
Over 9.6K downloads in the last 90 days.

Commonly used with cooler

Based on how often these packages appear together in public requirements.txt files on GitHub.

pyprofit

Libprofit wrapper for Python

cythrust

Cython bindings for the Thrust parallel library.

surgeo

Bayesian Improved Surname Geocoder model

admiral

Simple python high-performance computing cluster batch submission

pyinter

An interval package for Python.

regreg

A multi-algorithm Python framework for regularized regression

Assimulo

A package for solving ordinary differential equations and differential algebraic equations.

autocomplete

tiny 'autocomplete' tool using a "hidden markov model"

scikit-allel

A Python package for exploring and analysing genetic variation data.

cluster-lensing

Galaxy Cluster and Weak Lensing Tools

nvector

Solves all kinds of geographical position calculations.

PyResis

Python ship Resistance estimation package

cplex

A Python interface to the CPLEX Callable Library, Community Edition.

kernel_tuner

An easy to use CUDA/OpenCL kernel tuner in Python

scikits.bootstrap

Bootstrap confidence interval estimation routines for SciPy

lifelines

Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression

overload

Simple overloading of methods and functions through an @overload decorator

imtools

3D data processing toolbox

io3d

3D data read and write

Version usage of cooler

Proportion of downloaded versions in the last 3 months (only versions over 1%).

0.8.11

23.34%

0.8.2

4.60%

0.8.10

2.54%

0.8.7

2.33%

0.8.9

2.26%

0.8.6

2.25%

0.8.3

2.18%

0.8.5

2.03%

0.8.8

1.89%

0.8.6.post0

1.88%

0.2.1

1.85%

0.7.9

1.84%

0.7.10

1.84%

0.7.3

1.83%

0.7.6

1.81%

0.7.0

1.80%

0.7.11

1.80%

0.7.8

1.78%

0.4.1

1.78%

0.8.0

1.78%

0.7.2

1.77%

0.6.5

1.77%

0.7.7

1.77%

0.6.6

1.77%

0.6.1

1.77%

0.7.4

1.77%

0.6.0

1.75%

0.6.4

1.75%

0.6.3

1.75%

0.7.1

1.75%

0.8.1

1.74%

0.5.3

1.74%

0.3.0

1.74%

0.7.5

1.73%

0.8.4

1.73%

0.2

1.73%

0.4.0

1.73%

0.6.2

1.72%

0.5.0

1.72%

0.5.1

1.71%

0.5.2

1.70%