pip install pyensembl==1.9.4

Python interface to ensembl reference genome metadata

Source
Among top 10% packages on PyPI.
Over 8.9K downloads in the last 90 days.

Commonly used with pyensembl

Based on how often these packages appear together in public requirements.txt files on GitHub.

varcode

Variant annotation in Python

mhctools

Python interface to running command-line and web-based MHC binding predictors

mhcnames

Python library for MHC nomenclature parsing

serializable

Base class with serialization helpers for user-defined Python objects

typechecks

Helper functions for runtime type checking

mhcflurry

MHC Binding Predictor

isovar

Determine mutant protein sequences from RN using assembly around variants

sercol

Rich collection class with grouping and filtering helpers

tinytimer

Tiny Python benchmarking library

matplotlib-scalebar

Artist for matplotlib to display a scale bar

datacache

Helpers for transparently downloading datasets

sufam

So U Found A Mutation?

runstats

Compute statistics and regression in one pass

phylopandas

Pandas for phylogenetics

phylovega

Interactive Phylogenetic trees in Vega from Python.

pyasr

Ancestral sequence reconstruction using Python

epyc

Python computational experiment management

punk

Primitives for Uncovering New Knowledge.

tiingo

REST Client for Tiingo Data Platform API

Version usage of pyensembl

Proportion of downloaded versions in the last 3 months (only versions over 1%).

1.9.1

16.60%

1.9.4

10.75%

1.9.2

7.04%

1.7.3

6.10%

1.9.0

2.48%

1.9.3

2.24%

1.8.5

1.86%

1.1.0

1.74%

1.8.7

1.19%