MDAnalysis | Python Package Wiki

Based on how often these packages appear together in public requirements.txt files on GitHub.

cmake-format	Can format your listfiles so they don't look like crap
vtk	VTK is an open-source toolkit for 3D computer graphics, image processing, and visualization
meshio	I/O for many mesh formats
floatextras	Extra functions on the built-in `float` similar to those on `Decimal`.
sharedmem	Dispatch your trivially parallizable jobs with sharedmem.
astro-gala	Galactic dynamics in Python
baiji-serialization	Read and write common file formats to Amazon S3 and local files
baiji-pod	Static caching of files from Amazon S3, using baiji
baiji	High-level Python abstraction layer for Amazon S3
brandelion	Social media brand analytics
scipy-data_fitting	Complete pipeline for easy data fitting with Python.
healpy	Healpix tools package for Python
pykern	Python application support
deeptoolsintervals	A python module creating/accessing GTF-based interval trees with associated meta-data
skbold	Utilities and tools for machine learning on BOLD-fMRI data.
striplog	Tools for making and managing 1D subsurface data.
audioio	Platform independent interfacing of numpy arrays of floats with audio files and devices.
guano	GUANO, the "Grand Unified" bat acoustics metadata format
spectrum	Spectrum Analysis Tools

Proportion of downloaded versions in the last 3 months (only versions over 1%).

pip install MDAnalysis==2.0.0